External
links
Main databases
The
TIGR Arabidopsis thaliana Database
MIPS
- Arabidopsis thaliana genome project
TAIR
- The Arabidopsis Information Resource
PlantsP:
Functional Genomics of Plant Phosphorylation
Arabidopsis
Biological Resource Center (ABRC)
UK
CropNet, Arabidopsis Genome Resource (AGR)
KAOS
- The Kazusa Arabidopsis data opening site
A
Maize genome database
Electronic journals
Annual Review
Annual
Review of Biochemistry
Annual
Review of Cell & Dev. Biol.
Annual
Review of Genetics
Annual
Review of Plant Physiology/Plant Mol. Biology
Biochemistry
& Molecular Biology of Plants
Cell
Current
Biology
Current Opinions
in Plant Biology
EMBO
Genes & Development
Molecular
Cell
Nature
Plant
& Cell Physiology
Plant Cell
Plant
Journal
Plant Mol.
Biology
Plant
Physiology
PNAS
Science
STKE
TIBS
TICB
TIG
TIPS
Useful
Bioinformatics on-line tools
SMART
- Simple Modular Architecture Research Tool
ExPASy Molecular
Biology Server
CBS
Prediction servers
BCM
Search Launcher
Network
Protein Sequence Analysis
Promoter
Analysis and Search Tools: How to Identify New & Important Cis-Elements
T-DNA resources
Knockout
At number and BLAST Search
Salk Institute
Genome Analysis Laboratory
TMRI/Syngenta
Genetrap
Wisconsin Arabidopsis Knockout Facility
The
SLAT Lines
Tools for
Cloning
Web
Map Preference
Molecular
Toolkit
Motif recognition
and prediction tools
MOTIF Searching
Protein and Nucleic Acid Sequence Motifs
TFSEARCH
Searching Transcription Factor Binding Sites
TRANSFAC
- The Transcription Factor Database
PLACE
Home
PlantCARE
The
Gibbs Motif Sampler Homepage
AlignACE
homepage
Regulatory
Motif Search
RSA-tools
MEME
- Introduction
MAST - Introduction
Schroeder
Lab MEME Page
Prediction
of Protein Structure from Sequence
HMMTOP
- Prediction of transmembrane helices and topology of proteins
PredictProtein
- Prediction of transmembrane helix location and topology
SOSUI
- Prediction of transmembrane regions
TMHMM
- Prediction of transmembrane helices in proteins
TopPred
2 - Topology prediction of membrane proteins
PHD
- PredictProtein server for secondary structure, solvent accesibility,
and transmembrane segments
PhdThreader
- (fold recognition by prediction-based threading)
Protein
structural analysis, BMERC
Submission
form for protein domain and foldclass prediction
NNSSP
(prediction of protein secondary sturcture by nearest-neighbor algorithms)
SSPRED
(secondary structure prediction with multiple alignment)
SSCP
(secondary structure prediction content with amino acid composition)
SOPM
(Self Optimized Prediction Method) at IBCP, France.
MultPredict
(predict secondary structure based on multiple sequence alignment)
TMAP
(service predicting transmembrane segments in proteins)
TMpred
(prediction of transmembrane regions and orientation)
NIH
Molecular Modeling Homepage (modelling homepage with links)
COILS
(prediction of coiled coil regions in proteins)
PREDATOR
(protein secondary structure prediction from single sequence)
DAS
(Dense Alignment Surface; prediction of transmembrane regions in proteins)
Fold-recognition
at UCLA-DOE STRUCTURE PREDICTION SERVER
Plant
Comparative Genomics
Resource
for Plant Comparative Genomics
Mircroarray
Resource
Arabidopsis
Functional Genomics Consortium
Microarray
Gene Expression Data Society - MGED Society
Minimum
information about a microarray experiment - MIAME
BASE
- BioArray Software Environment
Gene
Expression Ommibus
Large-Scale
Analysis of the Arabidopsis Microarray Data at TAIR
TIGR
Microarray Software Suite
Expression
Profiler at the EBI
dChip
Cluster
Analysis and Visualization
GeneCluster
GenMAPP
DNA
Microarray (Genome Chip)
Silicon
Genetics
MGH
Microarray Core
Affymetrix
Axon
Genemachines
Genispehere
Telcom
Qiagen/Operon
Incyte
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