TR FAMILIES |
Number of members |
MGH |
Mendel |
AP2/EREBP |
167 |
144 |
ABI3/VP1 |
14 |
14 |
Alfin-like |
7 |
7 |
ARF (Auxin Response Factor) |
24 |
23 |
ARID/BRIGHT |
|
4 |
Argonautea |
10 |
|
ARR-A class transcription factorb |
11 |
|
ARR-B class transcription factor, GARPb |
12 |
12 |
Pseudo ARR transcription factorb |
9 |
|
G2-like transcription factor, GARPb |
42 |
44 |
AS2/LOB (Asymmetric Leaves2/Lateral Organ Boundaries)c |
43 |
|
AT-rich interaction domain containing transcription
factord |
4 |
|
AtSRe |
7 |
|
Aux/IAA |
29 |
26 |
B3 transcription factorf |
40 |
|
bHLH (Basic Helix-Loop-Helix) |
166 |
139 |
Bromodomain proteinsa |
13 |
|
bZIP transcription factor |
95 |
81 |
BZR |
6 |
|
C2C2(Zn) |
|
|
C2C2(Zn) CO-like, Constans-like zinc finger |
35 |
33 |
C2C2(Zn) DOF zinc finger |
40 |
37 |
C2C2(Zn) GATA transcription factor |
29 |
28 |
C2C2(Zn) YABBY |
6 |
6 |
C2H2 zinc finger |
153 |
105 |
C3H zinc finger |
143 |
33 |
CCAAT box binding factor |
|
|
unclassified CCAAT box binding factor |
2 |
|
DR1 |
2 |
2 |
HAP2 |
10 |
10 |
HAP3 |
11 |
11 |
HAP5 |
13 |
13 |
Chromatin remodeling factora, e |
50 |
|
CPP(Zn) (CPP1-related transcription factor) |
8 |
8 |
Dicer-Like |
4 |
|
DNA methyltransferases |
11 |
|
E2F/DP transcription factor |
9 |
8 |
EIN3 and EIN3-like(EIL) transcription factor |
6 |
6 |
ELF3 and ELF3-likee |
2 |
|
FHAe |
5 |
|
GeBP and GeBP like |
16 |
|
General Transcription |
91 |
|
Global transcription factora |
20 |
|
GRAS transcription factor |
32 |
32 |
HB (Homeobox transcription factor) |
98 |
89 |
HMG (High mobility group)g |
2 |
10 |
Histone acetyltransferase and Histone acetyltransferase
related |
14 |
|
Histone deacetylases |
18 |
|
Histone |
50 |
|
HSF (heat shock transcription factor) |
29 |
26 |
JUMONJI |
11 |
9 |
MADS box transcription factor |
127 |
82 |
Methyl binding domain proteins |
12 |
|
MYB super family |
|
|
MYB domain transcription factor |
184 |
136 |
MYB-related transcription factor |
46 |
54 |
NAC domain transcription factor |
116 |
109 |
NIN-like bZIP-related |
14 |
15 |
Nucleosome/chromatin assembly factor (HMG homologs)
a, g |
|
|
Nucleosome/chromatin assembly factor group A
(NAP1 homologs) |
6 |
|
Nucleosome/chromatin assembly factor group B
(CAF1 homologs) |
2 |
|
Nucleosome/chromatin assembly factor group C
(RBP4/7 homolog) |
5 |
|
Nucleosome/chromatin assembly factor group D
(HMG homologs) |
12 |
|
Nucleosome/chromatin assembly factor group E
(ACF1 homologs) |
1 |
|
PHD finger transcription factor e,
f |
11 |
|
PHOR1e |
22 |
|
Polycomb Group (PcG) Protein |
13 |
4 |
Putative DNA-binding proteinf |
|
|
AT-hook DNA-binding protein |
9 |
|
pentatricopeptide (PPR) repeat-containing |
10 |
|
SAR DNA-binding protein |
3 |
|
DNA-binding protein |
288 |
|
Putative transcription regulatorf |
89 |
|
SBP (Squamosa promoter binding protein) |
16 |
16 |
SET-domain transcriptional regulatora |
39 |
|
Silencing defectivea |
2 |
|
Silencing Groupa |
5 |
|
SNF7f |
13 |
|
TCP transcription factor |
32 |
25 |
Trihelix (Triple-Helix transcription factor) |
44 |
28 |
TUB transcription factor |
11 |
11 |
WRKY domain transcription factorh |
80 |
72 |
Zn-finger(CCHC) e |
2 |
|
PWWP doain proteine |
4 |
|
LUG and LUG-likee |
2 |
|
TAZ transcription factore |
5 |
|
NPR1 and NPR1-likee |
6 |
|
Other |
|
20 |
Single Members |
|
|
COP1 |
1 |
|
AN |
1 |
|
CIA2 |
1 |
|
DET1 |
1 |
|
EMF1 |
1 |
|
FRY2 |
1 |
|
LFY |
1 |
1 |
MFP1 (MAR binding filament-like protein) |
1 |
|
RBL1 (Retinoblastoma) |
1 |
|
RHL1 |
1 |
|
SAP |
1 |
|
SNF2/ISWI |
1 |
|
SNI1 |
1 |
|
SRS, SHI |
1 |
|
|
2864 |
1533 |
Note: Family names used in Riechmann
et al. (Science Vol. 290, 2105-2100, 15 December, 2000) were
followed in most cases, which is available through TAIR. New
families were added based on procedures described in the summary. |
a. These families were obtained
from ChromDB. |
b. We did not follow the naming
convention of the GARP super family. Rather we classified the
genes to two families: ARR-B type and G2-like. However, two
of the Pseudo ARR genes in our list were classified as GARP
family members according to Mendel and Ohio State U AtTFDB.
We believe this is why we have only 42 G2-like genes while Reichmann
et al. reported 44. |
c. AS2 and LOB are two different
names for the same family of genes. |
d. These families were extracted
from the Mendel list made available through TAIR. |
e. These families were obtained
through literature search and/or blast. |
f. These lists were obtained
through TIGR gene name search and/or TAIR GO annotation filtering
using relavant keywords. |
g. There are totally 14 High
mobility group (HMG) family genes, out of which 12 are also
called "Nucleosome/chromatin assembly factor group D" in ChromDB.
3 of the 12 genes belong to the "ARID/BRIGHT" family according
to TIGR ATH1 annotation. We classified these genes based on
ChromDB. This is why there are only 2 HMG and no ARID/BRIGHT
genes indicated in this table. |
h. We couldn't find AGI number
for WRKY5. The AGI number for AtWRKY33 is At2g38470. But BLASTN
search using EST sequence AV526908 as query against TIGR ATH
cDNA database revealed that WRKY73 might be the same as WRKY33. |