12/26/03 (VJC) High-affinity salicylic
acid-binding protein 2 is required for plant innate immunity and has
salicylic acid-stimulated lipase activity Dhirendra Kumar
and Daniel F. Klessig PNAS _ December 23, 2003 _ vol. 100 _ no.
26 _ 16101-16106
A high-affinity salicylic acid-binding protein (SABP2) was purified
and the corresponding gene cloned from tobacco. The protein possessed
a lipase activity stimulated by SA and could potentially act as
an SA sensor to mediate defense signaling involving fatty acid signals.
The work revealed a novel family of putative plant receptors with
associated hydrolase activities for stress hormones.
A Gene Expression Map of the Arabidopsis Root
Kenneth Birnbaum, Dennis E. Shasha, Jean Y. Wang, Jee W. Jung, Georgina
M. Lambert, David W. Galbraith, and Philip N. Benfey
Science 2003 December 12; 302: 1956-1960
The authors used five separate GFP lines (expressing in stele,
endodermis, endodermis plus cortex, epidermal atrichoblast cells,
and lateral root cap) to dissociate 1 cm root tips into GFP-tagged
single cells by protoplasting and a fluorescence-activated cell
sorting. The mRNA was analyzed using microarrays and high-resolution
spatial and temporal expression profiles (digital in situ) were
generated for Arabidopsis roots. A gene expression map was drawn
for 15 different zones of the root that correspond to cell types
and tissues at progressive developmental stages. The map will serve
to guide future studies of regulatory mechanisms underlying cell-type-specific
gene expression programs during root development.
Plant Responses to Ethylene Gas Are Mediated by SCFEBF1/EBF2-Dependent
Proteolysis of EIN3 Transcription Factor
Cell, Vol. 115, 667-677, December 12, 2003
Hongwei Guo and Joseph R. Ecker
The authors showed that the key transcription factor of ethylene
signaling, EIN3, was stabilized by ethylene, which required EIN2,
EIN5 and EIN6 functions. A search for specific F-box protein genes
for EIN3 regulation based on ethylene induction of gene expression
pointed to EBF2 and its closest homologue EBF1. Plants over-expressing
either F-box gene exhibited ethylene insensitivity and reduced EIN3
levels, while the ebf1 ebf2 double mutant showed constitutive ethylene
phenotypes and increased EIN3 accumulation. The work established
a specific connection between an unusual MAPK cascade to the SCF-mediated
degradation of EIN3 in ethylene signaling. How do EIN2, EIN5 and
EIN6 bridge between these biochemical activities will be the next
challenging question.
EIN3-Dependent Regulation of Plant Ethylene Hormone Signaling
by Two Arabidopsis F Box Proteins: EBF1 and EBF2
Cell, Vol. 115, 679-689, December 12, 2003
Thomas Potuschak, Esther Lechner, Yves Parmentier, Shuichi Yanagisawa,
Sandrine Grava, Csaba Koncz, and Pascal Genschik
The yeast two-hybrid screen was used to identify EIN3 and EIL1,
key transcription factors of ethylene signaling, as potential interactors
of the nuclear-localized F-box protein EBF1. Over-expression of
EBF1 conferred ethylene insensitivity, whereas the ebf1 ebf2 double
mutant displayed constitutive ethylene signaling. It was shown that
ethylene increased EIN3 levels most likely by decreasing its degradation
through the SCF complex linked through specific F-box proteins EBF1
and EBF2. The work also revealed a feedback loop through the elevation
of EBF2 transcript by ethylene. It will be interesting to determine
how EIN3 or/and EBF1/EBF2 are regulated by the upstream components,
CTR1 and EIN2, that act negatively and positively in ethylene signal
transduction.
High throughput virus-induced gene silencing implicates heat
shock protein 90 in plant disease resistance
The EMBO Journal Vol. 22 No. 21 pp. 5690-5699, 2003
Rui Lu, Isabelle Malcuit, Peter Moffett, Maria T. Ruiz, Jack Peart,
Ai-Jiuan Wu, John P. Rathjen, Abdelhafid Bendahmane, Louise Day
and David C. Baulcombe
The work validated the suitability of using virus-induced gene
silencing (VIGS) based on the potato virus X (PVX) vector for a
high throughput screen of a normalized tobacco cDNA library (4992
clones) for genes involved in disease resistance. The suppression
of most candidate genes (>90%) reduced hypersensitive responses
(HR) associated with Pto-mediated resistance against Pseudomonas
syringe but not disease resistance, suggesting a complex regulation
of HR in defense signaling. The system is powerful and provides
extra advantages to identify genes whose deficiency could cause
lethality or was more difficult to detect due to redundancy.
Two MAPK cascades, NPR1, and TGA transcription factors play a
role in Pto-mediated disease resistance in tomato
Ekengren SK, Liu Y, Schiff M, Dinesh-Kumar SP, Martin GB
The Plant J 2003, 36: 905-917
The authors used an improved tobacco rattle virus (TRV) vector
for a virus-induced gene silencing (VIGS) screen to reveal the importance
of nine conserved signaling components in the Pto-mediated disease
resistance in tomato. The study revealed the roles of multiple evolutionarily
conserved signaling mechanisms in innate immune responses. The system
established here will facilitate high-throughput screens for future
discoveries of novel and conserved components in diverse signaling
pathways in tomato and other plants using the new TRV vector.
Ethylene Regulates Arabidopsis Development via the Modulation
of DELLA Protein Growth Repressor Function
The Plant Cell, Vol. 15, 2816-2825, December 2003
Patrick Acharda, Wim H. Vriezen1, Dominique Van Der Straeten and
Nicholas P. Harberd
The study showed that ethylene delayed the GA-induced disappearance
of a DELLA nuclear repressor protein RGA via a CTR1-dependent signaling
pathway. The finding suggested an integrative role of RGA in ethylene,
auxin and GA responses in controlling elongation and differential
growth of plant cells. It will be interesting to determine how CTR1
activity modulates the degradation of transcription activator EIN3
in ethylene signaling and transcription repressor RGA in GA signaling.
Efflux-dependent auxin gradients establish the apical-basal axis
of Arabidopsis
Jiri Friml1, Anne Vieten1, Michael Sauer, Dolf Weijers, Heinz Schwarz,
Thorsten Hamann, Remko Offringa & Gerd Jurgens
Nature 426: 147-153, 13 NOVEMBER 2003
The authors used a variety of molecular, chemical, immunological,
tissue culture and genetic tools to demonstrate the central role
of auxin efflux carriers in determining cell polarity from the first
asymmetric division of the zygote to the formation of apical-basal
axis during embryogenesis. The work provided the first conceptual
framework for axis formation through active accumulation of a signaling
molecule in plants. It will be interesting to determine the regulatory
mechanisms underlying the dramatic pattern changes of auxin efflux
carriers throughout plant development.
Empirical Analysis of Transcriptional Activity in the Arabidopsis
Genome
Yamada et al.
Science October 31; 302: 842-846
A set of custom high-density oligonucleotide arrays representing
>94% of the Arabidopsis genome sequence (genome tiling arrays)
and hybridizations with four RNA populations (seedling, root, flower
and suspension culture cell) were used to generate a transcription
map for the Arabidopsis genome. The incorporation of full-length
cDNA sequences resulted in the dramatic improvement of the genome
annotation. The expression of more than 60% of annotated genes was
detected and 30% annotated genes showed significant antisense RNA
expression, suggesting that double-strand RNA formation may be a
general phenomenon in plant cells. Two unusually highly expressed
"hot spots" were found within the genetically defined
centromeres of chromosomes 2 and 3. The data provide a valuable
resource for future functional genomic and proteomic studies. Many
powerful applications of the genome tiling arrays, such as identifying
non-coding RNAs, determining transcription factor binding sites,
and detecting mutations, polymorphisms and modifications of DNA,
will be possible when the technology becomes more affordable.
Control of leaf morphogenesis by microRNAs
Javier F. Palatnik, Edwards Allen, Xuelin Wu, Carla Schommer, Rebecca
Schwab, James C. Carrington & Detlef Weigel
NATURE 425: 257- 263; 18 SEPTEMBER 2003
The authors identified a new microRNA, miR-JAW, using an activation
tagging genetic screen and several TCP genes as its putative targets
based on global transcript analysis.
It was shown that miRNA-directed cleavage of specific TCP mRNAs
was required for regulating full-length mRNA levels and controlling
proper timing of the transition between cell division and differentiation
in developing leaves. Overexpression of miRNA-resistant forms of
target genes displayed marked morphological defects, thus provided
strong evidence for miRNA regulation during normal plant growth.
Future challenges will be to elucidate the complexity and precise
regulation of a family of miRNAs that are related to miR-JAW and
how these miRNAs control the abundance of target transcripts in
regulatory networks.
A cell surface receptor mediates extracellular Ca2+ sensing
in guard cells
Shengcheng Han, Ruhang Tang, Lisa K. Anderson, Todd E. Woerner,
& Zhen-Ming Pei
Nature 425: 11 September 2003, 196-200
An Arabidopsis plasma membrane low-affinity/high-capacity Ca2+
-sensing receptor (CAS) was isolated using a functional screen in
human embryo kidney (HEK293) cells based on [Ca2+]o -induced [Ca2+]i
increases (CICI) and ratiometric imaging of the fluorescent Ca2+
sensitive dye Fura-2. CAS is a plant specific protein with a single
transmembrane domain and N-terminal Ca2+ binding sites, and plays
an essential role in guard cell Ca2+o signaling and in bolting.
The work illustrated the power of using a heterologous expression
system to identify novel genes with unique structures and functions
in plant signaling.
A Seven-Transmembrane RGS Protein That Modulates Plant Cell
Proliferation
Jin-Gui Chen, Francis S. Willard, Jirong Huang, Jiansheng Liang,
Scott A. Chasse, Alan M. Jones, and David P. Siderovski
Science 2003 September 19; 301: 1728-1731
This study is focused on the characterization of a novel Arabidopsis
seven transmembrane domain protein AtRGS1 with a C terminal RGS-box
(Regulators of G-protein signaling). AtRGS1 protein interacted with
AtGPA1 preferentially in the transition-state and acted as a negative
regulator of AtGPA1 by exerting GAP activity. Mutant plant analyses
suggested a role of AtRGS1 in cell proliferation and perhaps in
GA and glucose signaling. It will be interesting to investigate
the potential ligand of the putative receptor domain of AtRGS1.
Evidence that SNF1-related kinase and hexokinase are involved
in separate sugar-signaling pathways modulating post-translational
redox activation of ADP-glucose pyrophosphorylase in potato tubers
Axel Tiessen, Katrin Prescha, Anja Branscheid, Natalia Palacios,
Rowan McKibbin, Nigel G. Halford and Peter Geigenberger
The Plant Journal (2003), Aug, 35(4): 490-500
Potato tuber discs were used as a model system to identify candidate
components linking the post-translational redox modulation of ADP-glucose
pyrophosphorylase (AGPase) in response to sugar supply for starch
synthesis. It was discovered that glucose and sucrose could lead
to redox activation of AGPase through distinct mechanisms that relied
on hexokinase signaling and SNF1-related kinase activities, respectively.
The work added new evidence for the distinction between the glucose
and sucrose signaling pathways in plants.
A MAPKK Kinase Gene Regulates Extra-Embryonic Cell Fate in
Arabidopsis
Wolfgang Lukowitz, Adrienne Roeder, Dana Parmenter, and Chris Somerville
Cell, Vol. 116, 109-119, January 9, 2004
An Arabidopsis MAP kinase kinase kinase (MAPKKK) gene YODA has
been discovered to execute the first cell fate decision for basal
lineage, which forms the extra-embryonic suspensor after the asymmetric
division of the zygote. Expression of the constitutively active
YODA could suppress proembryo formation and the loss-of-function
mutants also exhibit abnormal embryogenesis and postembryonic development.
Since YODA transcript is expressed ubiquitously and the same MAPKKK
could often function in distinct MAPK pathways, it is possible that
YODA might have other important functions throughout embryogenesis
and plant development.
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