Related
links
Main databases
The
TIGR Arabidopsis thaliana Database
MIPS
- Arabidopsis thaliana genome project
TAIR
- The Arabidopsis Information Resource
PlantsP:
Functional Genomics of Plant Phosphorylation
Arabidopsis
Biological Resource Center (ABRC)
UK
CropNet, Arabidopsis Genome Resource (AGR)
KAOS
- The Kazusa Arabidopsis data opening site
MaizeGDB
Electronic journals
Annual
Review
Annual
Review of Biochemistry
Annual
Review of Cell & Dev. Biol.
Annual
Review of Genetics
Annual
Review of Plant Physiology/Plant Mol. Biology
Biochemistry
& Molecular Biology of Plants
Cell
Current
Biology
Current
Opinions in Plant Biology
EMBO
Genes
& Development
Molecular
Cell
Nature
Plant
& Cell Physiology
Plant
Cell
Plant
Journal
Plant
Mol. Biology
Plant
Physiology
PNAS
Science
STKE
TIBS
TICB
TIG
TIPS
Useful Bioinformatics on-line
tools
SMART
- Simple Modular Architecture Research Tool
ExPASy
Molecular Biology Server
CBS
Prediction servers
BCM
Search Launcher
Network
Protein Sequence Analysis
Promoter
Analysis and Search Tools: How to Identify New & Important Cis-Elements
T-DNA resources
Knockout
At number and BLAST Search
Salk
Institute Genome Analysis Laboratory
TMRI/Syngenta
Genetrap
Wisconsin Arabidopsis Knockout Facility
The
SLAT Lines
Tools for Cloning
Web
Map Preference
Molecular
Toolkit
Motif recognition and prediction
tools
MOTIF
Searching Protein and Nucleic Acid Sequence Motifs
TFSEARCH
Searching Transcription Factor Binding Sites
TRANSFAC
- The Transcription Factor Database
PLACE
Home
PlantCARE
The
Gibbs Motif Sampler Homepage
AlignACE
homepage
Regulatory
Motif Search
RSA-tools
MEME
- Introduction
MAST - Introduction
Schroeder
Lab MEME Page
Prediction of Protein Structure
from Sequence
HMMTOP
- Prediction of transmembrane helices and topology of proteins
PredictProtein
- Prediction of transmembrane helix location and topology
SOSUI
- Prediction of transmembrane regions
TMHMM
- Prediction of transmembrane helices in proteins
TopPred
2 - Topology prediction of membrane proteins
PHD
- PredictProtein server for secondary structure, solvent accesibility,
and transmembrane segments
PhdThreader
- (fold recognition by prediction-based threading)
Protein
structural analysis, BMERC
Submission
form for protein domain and foldclass prediction
NNSSP
(prediction of protein secondary sturcture by nearest-neighbor algorithms)
SSPRED
(secondary structure prediction with multiple alignment)
SSCP
(secondary structure prediction content with amino acid composition)
SOPM
(Self Optimized Prediction Method) at IBCP, France.
MultPredict
(predict secondary structure based on multiple sequence alignment)
TMAP
(service predicting transmembrane segments in proteins)
TMpred
(prediction of transmembrane regions and orientation)
NIH
Molecular Modeling Homepage (modelling homepage with links)
COILS
(prediction of coiled coil regions in proteins)
PREDATOR
(protein secondary structure prediction from single sequence)
DAS
(Dense Alignment Surface; prediction of transmembrane regions in
proteins)
Fold-recognition
at UCLA-DOE STRUCTURE PREDICTION SERVER
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