Related links

| main databases | e-journals | bioinformatics tools | cloning tool | T-DNA resource | motif prediction | protein structure prediction |

Main databases

The TIGR Arabidopsis thaliana Database

MIPS - Arabidopsis thaliana genome project

TAIR - The Arabidopsis Information Resource

PlantsP: Functional Genomics of Plant Phosphorylation

Arabidopsis Biological Resource Center (ABRC)

UK CropNet, Arabidopsis Genome Resource (AGR)

KAOS - The Kazusa Arabidopsis data opening site

MaizeGDB

 

Electronic journals

Annual Review

Annual Review of Biochemistry

Annual Review of Cell & Dev. Biol.

Annual Review of Genetics

Annual Review of Plant Physiology/Plant Mol. Biology

Biochemistry & Molecular Biology of Plants

Cell

Current Biology

Current Opinions in Plant Biology

EMBO

Genes & Development

Molecular Cell

Nature

Plant & Cell Physiology

Plant Cell

Plant Journal

Plant Mol. Biology

Plant Physiology

PNAS

Science

STKE

TIBS

TICB

TIG

TIPS

 

Useful Bioinformatics on-line tools

SMART - Simple Modular Architecture Research Tool

ExPASy Molecular Biology Server

CBS Prediction servers

BCM Search Launcher

Network Protein Sequence Analysis

Promoter Analysis and Search Tools: How to Identify New & Important Cis-Elements

 

T-DNA resources

Knockout At number and BLAST Search

Salk Institute Genome Analysis Laboratory

TMRI/Syngenta

Genetrap

Wisconsin Arabidopsis Knockout Facility

The SLAT Lines

 

Tools for Cloning

Web Map Preference

Molecular Toolkit

 

Motif recognition and prediction tools

MOTIF Searching Protein and Nucleic Acid Sequence Motifs

TFSEARCH Searching Transcription Factor Binding Sites

TRANSFAC - The Transcription Factor Database

PLACE Home

PlantCARE

The Gibbs Motif Sampler Homepage

AlignACE homepage

Regulatory Motif Search

RSA-tools

MEME - Introduction

MAST - Introduction

Schroeder Lab MEME Page

Prediction of Protein Structure from Sequence

HMMTOP - Prediction of transmembrane helices and topology of proteins

PredictProtein - Prediction of transmembrane helix location and topology

SOSUI - Prediction of transmembrane regions

TMHMM - Prediction of transmembrane helices in proteins

TopPred 2 - Topology prediction of membrane proteins

PHD - PredictProtein server for secondary structure, solvent accesibility, and transmembrane segments

PhdThreader - (fold recognition by prediction-based threading)

Protein structural analysis, BMERC

Submission form for protein domain and foldclass prediction

NNSSP (prediction of protein secondary sturcture by nearest-neighbor algorithms)

SSPRED (secondary structure prediction with multiple alignment)

SSCP (secondary structure prediction content with amino acid composition)

SOPM (Self Optimized Prediction Method) at IBCP, France.

MultPredict (predict secondary structure based on multiple sequence alignment)

TMAP (service predicting transmembrane segments in proteins)

TMpred (prediction of transmembrane regions and orientation)

NIH Molecular Modeling Homepage (modelling homepage with links)

COILS (prediction of coiled coil regions in proteins)

PREDATOR (protein secondary structure prediction from single sequence)

DAS (Dense Alignment Surface; prediction of transmembrane regions in proteins)

Fold-recognition at UCLA-DOE STRUCTURE PREDICTION SERVER

 

| main databases | e-journals | bioinformatics tools | cloning tool | T-DNA resource | motif prediction | protein structure prediction |