T-DNA
insertion from TMRI / Syngenta |
Alias |
AGI |
TDNA insertion |
Score |
Overlap |
Direction |
Location |
Response regulators (ARR) |
ARR3 |
At1g59940 |
Garlic_398_C12.b.1a.Lb3Fa |
56 |
31/32 |
Plus/Minus |
intron |
|
|
Garlic_339_C06.b.1a.Lb3Fa |
52 |
41/46 |
Plus/Minus |
intron |
ARR4 |
At1g10470 |
Garlic_208_C01.b.1a.Lb3Fa |
140 |
133/150 |
Plus/Plus |
3 UTR 83 |
|
|
Garlic_304_A07.b.1a.Lb3Fa |
117 |
58/59 |
Plus/Plus |
5 UTR -127 |
|
|
Garlic_398_C12.b.1a.Lb3Fa |
79 |
49/53 |
Plus/Minus |
exon 2 |
|
|
Garlic_339_C06.b.1a.Lb3Fa |
62 |
47/53 |
Plus/Minus |
exon 2 |
|
|
Garlic_425_C01.b.1a.Lb3Fa |
53 |
43/49 |
Plus/Plus |
intron |
|
|
Garlic_10_H04.b.1a.Lb3Fa |
47 |
22/22 |
Plus/Plus |
exon 5 |
|
|
Garlic_679_B12.b.1a.Lb3Fa |
42 |
23/24 |
Plus/Plus |
3 UTR 175 |
ARR5 |
At3g48100 |
Garlic_425_C01.b.1a.Lb3Fa |
1125 |
603/625 |
Plus/Plus |
exon 4 |
|
|
Garlic_425_D01.b.1b.Lb3Fa |
467 |
266/279 |
Plus/Plus |
exon 5 |
|
|
Garlic_91_G02.b.1a.Lb3Fa |
44 |
21/21 |
Plus/Plus |
5 UTR -121 |
|
|
Garlic_360_F07.b.1b.Lb3Fa |
44 |
21/21 |
Plus/Plus |
exon 4 |
ARR6 |
At5g62920 |
Garlic_425_C01.b.1a.Lb3Fa |
97 |
79/90 |
Plus/Plus |
intron |
|
|
Garlic_425_D01.b.1b.Lb3Fa |
46 |
28/30 |
Plus/Plus |
exon 5 |
|
|
Garlic_98_D06.b.1a.Lb3Fa |
44 |
21/21 |
Plus/Plus |
3 UTR 213 |
|
|
Garlic_850_E09.b.1b.Lb3Fa |
44 |
21/21 |
Plus/Minus |
5 UTR -23 |
|
|
Garlic_831_B12.b.1a.Lb3Fa |
44 |
21/21 |
Plus/Plus |
5 UTR -216 |
|
|
Garlic_1284_A09.b.1a.Lb3Fa |
44 |
21/21 |
Plus/Minus |
5 UTR -24 |
ARR7 |
At1g19050 |
Garlic_513_C12.b.1b.Lb3Fa |
51 |
58/68 |
Plus/Plus |
exon 1 |
|
|
Garlic_581_D03.b.1b.Lb3Fa |
45 |
21/21 |
Plus/Plus |
exon 1 |
ARR8 |
At2g41310 |
Garlic_151_F03.b.1a.Lb3Fa |
649 |
414/455 |
Plus/Minus |
exon 2 |
|
|
Garlic_383_A06.b.1a.Lb3Fa |
192 |
94/95 |
Plus/Minus |
5 UTR -204 |
|
|
Garlic_247_D08.b.1a.Lb3Fc |
171 |
135/153 |
Plus/Minus |
intron |
|
|
Garlic_247_D08.b.1a.Lb3Fb |
141 |
255/313 |
Plus/Minus |
exon 2 |
|
|
Garlic_398_C12.b.1a.Lb3Fa |
57 |
57/67 |
Plus/Minus |
intron |
|
|
Garlic_425_C01.b.1a.Lb3Fa |
55 |
50/58 |
Plus/Plus |
intron |
|
|
Garlic_671_E11.b.1a.Lb3Fa |
44 |
84/105 |
Plus/Minus |
5 UTR -119 |
|
|
Garlic_R11_C04.b.1a.Lb3Fa |
42 |
20/20 |
Plus/Plus |
intron |
|
|
Garlic_776_G12.b.1a.Lb3Fa |
42 |
20/20 |
Plus/Plus |
5 UTR -188 |
|
|
Garlic_2_G10.b.1a.Lb3Fb |
42 |
20/20 |
Plus/Plus |
exon 5 |
|
|
Garlic_2_G10.b.1a.Lb3Fa |
42 |
20/20 |
Plus/Plus |
exon 5 |
ARR9 |
At3g57040 |
Garlic_151_F03.b.1a.Lb3Fa |
127 |
78/84 |
Plus/Minus |
intron |
|
|
Garlic_421_A09.b.1a.Lb3Fa |
95 |
52/53 |
Plus/Minus |
3 UTR 158 |
|
|
Garlic_247_D08.b.1a.Lb3Fc |
68 |
71/84 |
Plus/Minus |
intron |
|
|
Garlic_339_C06.b.1a.Lb3Fa |
49 |
59/71 |
Plus/Minus |
intron |
|
|
Garlic_564_E10.b.1b.Lb3Fa |
47 |
22/22 |
Plus/Plus |
intron |
|
|
Garlic_398_C12.b.1a.Lb3Fa |
47 |
46/54 |
Plus/Minus |
intron |
|
|
Garlic_686_E08.b.1a.Lb3Fa |
44 |
21/21 |
Plus/Plus |
5 UTR -117 |
|
|
Garlic_170_F03.b.1a.Lb3Fa |
44 |
21/21 |
Plus/Plus |
5 UTR -242 |
|
|
Garlic_811_C06.b.1b.Lb3Fa |
42 |
20/20 |
Plus/Plus |
5 UTR -284 |
|
|
Garlic_379_C02.b.1a.Lb3Fa |
42 |
23/24 |
Plus/Minus |
intron |
|
|
Garlic_140_B05.b.1a.Lb3Fa |
42 |
20/20 |
Plus/Minus |
5 UTR -239 |
ARR15 |
At1g74890 |
Garlic_513_C12.b.1b.Lb3Fa |
245 |
124/127 |
Plus/Plus |
5 UTR -111 |
|
|
Garlic_764_F11.b.1a.Lb3Fa |
168 |
79/79 |
Plus/Plus |
3 UTR 223 |
|
|
Garlic_1246_A07.b.1a.Lb3Fa |
100 |
50/51 |
Plus/Minus |
5 UTR -248 |
|
|
Garlic_1307_F06.b.1a.Lb3Fa |
53 |
25/25 |
Plus/Minus |
5 UTR -274 |
|
|
Garlic_513_C12.b.1a.Lb3Fa |
49 |
38/43 |
Plus/Plus |
5 UTR -297 |
|
|
Garlic_425_C01.b.1a.Lb3Fa |
45 |
21/21 |
Plus/Plus |
exon 5 |
ARR16 |
At2g40670 |
Garlic_398_C12.b.1a.Lb3Fa |
568 |
339/369 |
Plus/Minus |
exon 4 |
|
|
Garlic_339_C06.b.1a.Lb3Fa |
107 |
74/82 |
Plus/Minus |
intron |
|
|
Garlic_740_C02.b.1b.Lb3Fa |
94 |
74/84 |
Plus/Plus |
exon 1 |
|
|
Garlic_151_F03.b.1a.Lb3Fa |
43 |
29/32 |
Plus/Minus |
exon 1 |
ARR17 |
At3g56380 |
Garlic_740_C02.b.1b.Lb3Fa |
1073 |
602/637 |
Plus/Plus |
5 UTR -95 |
|
|
Garlic_339_C06.b.1a.Lb3Fa |
1015 |
505/518 |
Plus/Minus |
intron |
|
|
Garlic_398_C12.b.1a.Lb3Fa |
108 |
74/82 |
Plus/Minus |
intron |
|
|
Garlic_1265_H06.b.1a.Lb3Fa |
45 |
21/21 |
Plus/Minus |
3 UTR 294 |
|
|
Garlic_1164_B05.b.1a.Lb3Fa |
45 |
21/21 |
Plus/Minus |
5 UTR -45 |
ARR1 |
At3g16857 |
Garlic_823_A07.b.1b.Lb3Fa |
130 |
174/210 |
Plus/Minus |
exon 4 |
|
|
Garlic_102_B04.b.1a.Lb3Fa |
77 |
178/221 |
Plus/Plus |
exon 4 |
ARR2 |
At4g16110 |
Garlic_1213_F02.b.1a.Lb3Fa |
718 |
396/409 |
Plus/Plus |
exon 1 |
|
|
Garlic_112_D06.b.1a.Lb3Fa |
311 |
205/224 |
Plus/Plus |
5 UTR -280 |
|
|
Garlic_446_E01.b.1a.Lb3Fa |
247 |
199/225 |
Plus/Plus |
5 UTR -280 |
|
|
Garlic_446_D01.b.1a.Lb3Fa |
179 |
126/140 |
Plus/Plus |
5 UTR -196 |
|
|
Garlic_373_B11.b.1a.Lb3Fa |
54 |
36/38 |
Plus/Plus |
5 UTR -174 |
ARR10 |
At4g31920 |
Garlic_363_E06.b.1a.Lb3Fa |
491 |
238/238 |
Plus/Plus |
intron |
|
|
Garlic_840_E08.b.1a.Lb3Fa |
101 |
88/101 |
Plus/Plus |
5 UTR -123 |
|
|
Garlic_723_B03.b.1b.Lb3Fa |
43 |
21/21 |
Plus/Minus |
intron |
|
|
Garlic_570_G08.b.1a.Lb3Fa |
43 |
24/25 |
Plus/Plus |
intron |
|
|
Garlic_40_D02.b.1a.Lb3Fa |
43 |
24/25 |
Plus/Minus |
intron |
|
|
Garlic_375_D03.b.1a.Lb3Fa |
43 |
21/21 |
Plus/Minus |
3 UTR 69 |
|
|
Garlic_194_C08.b.1a.Lb3Fa |
43 |
21/21 |
Plus/Minus |
exon 2 |
ARR11 |
At1g67710 |
Garlic_823_E10.b.1b.Lb3Fa |
690 |
398/420 |
Plus/Minus |
3 UTR 197 |
|
|
Garlic_318_G09.b.1a.Lb3Fa |
607 |
349/364 |
Plus/Minus |
exon 5 |
|
|
Garlic_424_H08.b.1a.Lb3Fa |
208 |
110/112 |
Plus/Minus |
exon 3 |
|
|
Garlic_1213_F02.b.1a.Lb3Fa |
46 |
31/34 |
Plus/Plus |
exon 1 |
|
|
Garlic_912_H03.b.1a.Lb3Fa |
44 |
21/21 |
Plus/Plus |
exon 5 |
|
|
Garlic_326_D03.b.1a.Lb3Fa |
44 |
24/25 |
Plus/Minus |
exon 3 |
ARR12 |
At2g25180 |
Garlic_210_A09.b.1a.Lb3Fa |
112 |
54/54 |
Plus/Plus |
exon 1 |
|
|
Garlic_363_E06.b.1a.Lb3Fa |
50 |
39/44 |
Plus/Plus |
3 UTR 117 |
ARR13 |
At2g27070 |
Garlic_158_B05.b.1a.Lb3Fa |
348 |
210/226 |
Plus/Minus |
intron |
|
|
Garlic_299_E09.b.1a.Lb3Fa |
254 |
134/137 |
Plus/Plus |
3 UTR 48 |
|
|
Garlic_72_G10.b.1a.Lb3Fa |
65 |
60/68 |
Plus/Minus |
3 UTR 132 |
|
|
Garlic_859_H04.b.1a.Lb3Fa |
61 |
48/54 |
Plus/Minus |
intron |
|
|
Garlic_156_F01.b.1b.Lb3Fa |
61 |
75/90 |
Plus/Minus |
intron |
|
|
Garlic_156_F01.b.1a.Lb3Fa |
53 |
65/78 |
Plus/Minus |
intron |
|
|
Garlic_641_A08.b.1a.Lb3Fa |
51 |
88/109 |
Plus/Minus |
intron |
ARR14 |
At2g01760 |
Garlic_278_B11.b.1a.Lb3Fa |
237 |
139/145 |
Plus/Minus |
exon 5 |
|
|
Garlic_630_D09.b.1a.Lb3Fa |
88 |
95/110 |
Plus/Minus |
5 UTR -185 |
|
|
Garlic_525_H10.b.1a.Lb3Fa |
48 |
23/23 |
Plus/Plus |
5 UTR -76 |
ARR18 |
At5g58080 |
Garlic_343_B06.b.1a.Lb3Fa |
755 |
466/499 |
Plus/Minus |
3 UTR 281 |
|
|
Garlic_340_G11.b.1a.Lb3Fa |
553 |
448/504 |
Plus/Minus |
3 UTR 304 |
|
|
Garlic_361_A11.b.1a.Lb3Fa |
334 |
177/182 |
Plus/Minus |
exon 6 |
|
|
Garlic_1247_C05.b.1a.Lb3Fa |
50 |
24/24 |
Plus/Minus |
exon 2 |
|
|
Garlic_915_A02.b.1a.Lb3Fa |
45 |
22/22 |
Plus/Minus |
exon 5 |
ARR21 |
At5g07210 |
Garlic_740_D02.b.1a.Lb3Fa |
153 |
177/211 |
Plus/Minus |
3 UTR 127 |
ARR22 |
At3g04280 |
Garlic_556_C10.b.1a.Lb3Fa |
67 |
123/147 |
Plus/Minus |
intron |
ARR23 |
At5g62120 |
Garlic_443_D03.b.1b.Lb3Fa |
303 |
181/193 |
Plus/Minus |
intron |
|
|
Garlic_729_H01.b.1a.Lb3Fa |
261 |
162/176 |
Plus/Plus |
3 UTR 95 |
ARR20 |
At3g62670 |
Garlic_1164_A02.b.1a.Lb3Fa |
234 |
225/258 |
Plus/Plus |
exon 1 |
|
|
Garlic_337_D12.b.1a.Lb3Fa |
192 |
103/105 |
Plus/Plus |
intron |
|
|
Garlic_892_C01.b.1a.Lb3Fa |
48 |
30/32 |
Plus/Minus |
exon 5 |
ARR19 |
At1g49190 |
no hits found |
|
|
|
|
APRR1/TOC1 |
At5g61380 |
no hits found |
|
|
|
|
APRR2 |
At4g18020 |
Garlic_326b_C07.b.1a.Lb3Fa |
716 |
367/369 |
Plus/Minus |
intron |
|
|
Garlic_326_C07.b.1a.Lb3Fa |
210 |
256/306 |
Plus/Minus |
intron |
APRR3 |
At5g60100 |
Garlic_R2b_C05.b.1a.Lb3Fa |
132 |
101/112 |
Plus/Plus |
exon 10 |
APRR4 |
At5g49240 |
Garlic_511_B10.b.1a.Lb3Fa |
120 |
78/85 |
Plus/Minus |
intron |
|
|
Garlic_511_E08.b.1a.Lb3Fa |
112 |
77/85 |
Plus/Minus |
intron |
|
|
Garlic_519_G01.b.1b.Lb3Fa |
88 |
66/74 |
Plus/Minus |
intron |
|
|
Garlic_519_G01.b.1a.Lb3Fa |
88 |
66/74 |
Plus/Minus |
intron |
|
|
Garlic_519_F01.b.1b.Lb3Fa |
88 |
66/74 |
Plus/Minus |
intron |
|
|
Garlic_410_C02.b.1a.Lb3Fa |
46 |
31/34 |
Plus/Plus |
intron |
APRR5 |
At5g24470 |
Garlic_667_F10.b.1a.Lb3Fa |
70 |
55/62 |
Plus/Minus |
3 UTR 93 |
APRR7 |
At5g02810 |
Garlic_1306_D06.b.1a.Lb3Fa |
449 |
259/271 |
Plus/Minus |
exon 2 |
|
|
Garlic_239_D10.b.1a.Lb3Fa |
221 |
108/108 |
Plus/Minus |
exon 7 |
APRR9 |
At2g46790 |
Garlic_1250_C05.b.1a.Lb3Fa |
118 |
70/73 |
Plus/Minus |
exon 6 |
|
|
Garlic_69_C03.b.1a.Lb3Fa |
46 |
22/22 |
Plus/Plus |
5 UTR -192 |
|
|
Garlic_56_H08.b.1a.Lb3Fa |
44 |
21/21 |
Plus/Minus |
intron |
APRR6 |
At1g68210 |
Garlic_600_E03.b.1a.Lb3Fa |
501 |
279/290 |
Plus/Minus |
3 UTR 302 |
|
|
Garlic_67_B01.b.1a.Lb3Fa |
221 |
199/229 |
Plus/Minus |
3 UTR 211 |
APRR8 |
At4g00760 |
Garlic_683_H09.b.1a.Lb3Fa |
108 |
65/69 |
Plus/Plus |
exon 6 |
|
|
|
|
|
|
|
Histidine kinases (AHK) |
CKI1 |
At2g47430 |
Garlic_392_H01.b.1a.Lb3Fa |
464 |
509/606 |
Plus/Minus |
exon 2 |
AHK1 |
At2g17820 |
no hits found |
|
|
|
|
AHK2 |
At5g35750 |
Garlic_1289_G06.b.1a.Lb3Fa |
87 |
88/102 |
Plus/Plus |
5 UTR -55 |
|
|
Garlic_501_F09.b.1a.Lb3Fa |
53 |
38/41 |
Plus/Plus |
exon 13 |
|
|
Garlic_575_E05.b.1b.Lb3Fa |
51 |
31/33 |
Plus/Minus |
exon 3 |
AHK3 |
At1g27320 |
Garlic_396_E02.b.1a.Lb3Fa |
215 |
147/157 |
Plus/Minus |
intron |
CRE1 |
At2g01830 |
Garlic_178_D11.b.1a.Lb3Fa |
177 |
86/86 |
Plus/Plus |
3 UTR 128 |
AHK5 |
At5g10720 |
Garlic_50_H11.b.1a.Lb3Fa |
73 |
78/92 |
Plus/Minus |
exon 9 |
|
|
Garlic_836_B03.b.1a.Lb3Fa |
69 |
40/42 |
Plus/Minus |
exon 9 |
ETR1 |
At1g66340 |
Garlic_293_B06.b.1a.Lb3Fa |
304 |
179/188 |
Plus/Minus |
3 UTR 292 |
ERS1 |
At2g40940 |
Garlic_855_D07.b.1a.Lb3Fa |
69 |
103/123 |
Plus/Plus |
5 UTR -299 |
|
|
Garlic_R3_E01.b.1a.Lb3Fa |
44 |
25/26 |
Plus/Minus |
intron |
ETR2 |
At3g23150 |
Garlic_197_H04.b.1a.Lb3Fa |
45 |
22/22 |
Plus/Plus |
exon 1 |
|
|
Garlic_197_G04.b.1a.Lb3Fa |
45 |
22/22 |
Plus/Plus |
exon 1 |
|
|
Garlic_197_F04.b.1a.Lb3Fa |
45 |
22/22 |
Plus/Plus |
exon 1 |
|
|
Garlic_197_F03.b.1a.Lb3Fa |
45 |
22/22 |
Plus/Plus |
exon 1 |
EIN4 |
At3g04580 |
Garlic_189_C03.b.1a.Lb3Fa |
1141 |
665/697 |
Plus/Minus |
exon 2 |
|
|
Garlic_219_B02.b.1a.Lb3Fa |
43 |
21/21 |
Plus/Minus |
exon 2 |
ERS2 |
At1g04310 |
Garlic_561_C01.b.1b.Lb3Fa |
706 |
422/441 |
Plus/Minus |
3 UTR 154 |
|
|
Garlic_344_A05.b.1a.Lb3Fa |
245 |
118/118 |
Plus/Minus |
5 UTR -181 |
|
|
Garlic_653_D01.b.1a.Lb3Fa |
137 |
240/294 |
Plus/Minus |
3 UTR 21 |
|
|
Garlic_518_B10.b.1a.Lb3Fa |
54 |
38/42 |
Plus/Minus |
3 UTR 148 |
PHYA |
At1g09570 |
Garlic_44_E06.b.1a.Lb3Fa |
893 |
483/494 |
Plus/Plus |
exon 4 |
|
|
Garlic_44_E06.b.1b.Lb3Fa |
544 |
315/331 |
Plus/Plus |
exon 4 |
|
|
Garlic_403_H02.b.1a.Lb3Fa |
263 |
129/129 |
Plus/Plus |
exon 3 |
PHYB |
At2g18790 |
Garlic_759_A05.b.1a.Lb3Fa |
611 |
362/380 |
Plus/Minus |
exon 2 |
PHYC |
At5g35840 |
Garlic_221_F12.b.1a.Lb3Fa |
169 |
258/315 |
Plus/Plus |
exon 2 |
PHYD |
At4g16250 |
Garlic_759_A05.b.1a.Lb3Fa |
191 |
218/258 |
Plus/Minus |
exon 4 |
PHYE |
At4g18130 |
no hits found |
|
|
|
|
|
|
|
|
|
|
|
Histidine phosphotransfer proteins (AHP) |
AHP1(AtHP3) |
At3g21510 |
Garlic_676_G02.b.1a.Lb3Fa |
932 |
454/461 |
Plus/Minus |
3 UTR 302 |
|
|
Garlic_678_D03.b.1a.Lb3Fa |
91 |
64/71 |
Plus/Minus |
exon 5 |
|
|
Garlic_694_G05.b.1a.Lb3Fa |
42 |
20/20 |
Plus/Plus |
3 UTR 45 |
|
|
Garlic_661_F05.b.1a.Lb3Fa |
42 |
23/24 |
Plus/Plus |
5 UTR -47 |
|
|
Garlic_642_C03.b.1c.Lb3Fa |
42 |
20/20 |
Plus/Plus |
3 UTR 48 |
|
|
Garlic_60_C01.b.1a.Lb3Fa |
42 |
20/20 |
Plus/Minus |
3 UTR 215 |
|
|
Garlic_129_G06.b.1a.Lb3Fa |
42 |
20/20 |
Plus/Minus |
3 UTR 215 |
|
|
Garlic_129_F04.b.1a.Lb3Fa |
42 |
20/20 |
Plus/Minus |
3 UTR 215 |
|
|
Garlic_1285_C08.b.1a.Lb3Fb |
42 |
20/20 |
Plus/Minus |
3 UTR 215 |
AHP2(AtHP1) |
At3g29350 |
Garlic_56_F03.b.1a.Lb3Fa |
162 |
106/116 |
Plus/Plus |
3 UTR 186 |
|
|
Garlic_1291_C12.b.1a.Lb3Fa |
134 |
120/135 |
Plus/Plus |
exon 1 |
AHP3(AtHP2) |
At5g39340 |
Garlic_1281_G06.b.1a.Lb3Fa |
200 |
105/107 |
Plus/Plus |
5 UTR -137 |
AHP4 |
At3g16360 |
no hits found |
|
|
|
|
AHP5 |
At1g03430 |
Garlic_734_D10.b.1a.Lb3Fb |
133 |
67/67 |
Plus/Plus |
5 UTR -299 |
|
|
Garlic_539_D02.b.1c.Lb3Fa |
133 |
67/67 |
Plus/Plus |
5 UTR -299 |
|
|
Garlic_734_D10.b.1a.Lb3Fa |
127 |
64/64 |
Plus/Plus |
5 UTR -299 |
|
|
Garlic_562_B09.b.1a.Lb3Fa |
115 |
61/62 |
Plus/Plus |
exon 5 |
|
|
Garlic_562_C09.b.1a.Lb3Fa |
103 |
58/60 |
Plus/Plus |
exon 5 |
|
|
Garlic_734_E10.b.1b.Lb3Fa |
56 |
31/32 |
Plus/Plus |
5 UTR -288 |
AHP6 |
At1g80100 |
Garlic_194_D12.b.1a.Lb3Fa |
424 |
222/230 |
Plus/Minus |
3 UTR 191 |
|
|
Garlic_593_C05.b.1c.Lb3Fa |
43 |
23/24 |
Plus/Minus |
intron |
|
|
Garlic_523_F08.b.1c.Lb3Fa |
43 |
20/20 |
Plus/Minus |
intron |